Group Communication Patterns for High Performance Computing in Scala

We developed a Functional object-oriented Parallel framework (FooPar) for high-level high-performance computing in Scala. Central to this framework are Distributed Memory Parallel Data structures (DPDs), i.e., collections of data distributed in a shared nothing system together with parallel operations on these data. In this paper, we first present FooPar's architecture and the idea of DPDs and group communications. Then, we show how DPDs can be implemented elegantly and efficiently in Scala based on the Traversable/Builder pattern, unifying Functional and Object-Oriented Programming. We prove the correctness and safety of one communication algorithm and show how specification testing (via ScalaCheck) can be used to bridge the gap between proof and implementation. Furthermore, we show that the group communication operations of FooPar outperform those of the MPJ Express open source MPI-bindings for Java, both asymptotically and empirically. FooPar has already been shown to be capable of achieving close-to-optimal performance for dense matrix-matrix multiplication via JNI. In this article, we present results on a parallel implementation of the Floyd-Warshall algorithm in FooPar, achieving more than 94 % efficiency compared to the serial version on a cluster using 100 cores for matrices of dimension 38000 x 38000

Empirical line lists and absorption cross sections for methane at high temperature

Hot methane is found in many "cool" sub-stellar astronomical sources including brown dwarfs and exoplanets, as well as in combustion environments on Earth. We report on the first high-resolution laboratory absorption spectra of hot methane at temperatures up to 1200 K. Our observations are compared to the latest theoretical spectral predictions and recent brown dwarf spectra. The expectation that millions of weak absorption lines combine to form a continuum, not seen at room temperature, is confirmed. Our high-resolution transmittance spectra account for both the emission and absorption of methane at elevated temperatures. From these spectra, we obtain an empirical line list and continuum that is able to account for the absorption of methane in high temperature environments at both high and low resolution. Great advances have recently been made in the theoretical prediction of hot methane, and our experimental measurements highlight the progress made and the problems that still remain.Comment: 9 pages, 5 figures and 3 tables. For associated online data see http://dx.doi.org/10.1088/0004-637X/813/1/1

Satellite Earth observation to support sustainable rural development

Traditional survey and census data are not sufficient for measuring poverty and progress towards achieving the Sustainable Development Goals (SDGs). Satellite Earth Observation (EO) is a novel data source that has considerable potential to augment data for sustainable rural development. To realise the full potential of EO data as a proxy for socioeconomic conditions, end-users – both expert and non-expert – must be able to make the right decisions about what data to use and how to use it. In this review, we present an outline of what needs to be done to operationalise, and increase confidence in, EO data for sustainable rural development and monitoring the socioeconomic targets of the SDGs. We find that most approaches developed so far operate at a single spatial scale, for a single point in time, and proxy only one socioeconomic metric. Moreover, research has been geographically focused across three main regions: West Africa, East Africa, and the Indian Subcontinent, which underscores a need to conduct research into the utility of EO for monitoring poverty across more regions, to identify transferable EO proxies and methods. A variety of data from different EO platforms have been integrated into such analyses, with Landsat and MODIS datasets proving to be the most utilised to-date. Meanwhile, there is an apparent underutilisation of fusion capabilities with disparate datasets, in terms of (i) other EO datasets such as RADAR data, and (ii) non-traditional datasets such as geospatial population layers. We identify five key areas requiring further development to encourage operational uptake of EO for proxying socioeconomic conditions and conclude by linking these with the technical and implementational challenges identified across the review to make explicit recommendations. This review contributes towards developing transparent data systems to assemble the high-quality data required to monitor socioeconomic conditions across rural spaces at fine temporal and spatial scales

Exploring Halo Substructure with Giant Stars: The Dynamics and Metallicity of the Dwarf Spheroidal in Bootes

We report the results of a spectroscopic study of the Bootes (Boo) dwarf spheroidal (dSph) galaxy carried out with the WIYN telescope and the Hydra multifiber spectrograph. Radial velocities have been measured for 58 Boo candidate stars selected to have magnitudes and colors consistent with its red and asymptotic giant branches. Within the 13' half-light radius, seven members of Boo yield a systemic velocity of V_r=95.6+-3.4 km/s and a velocity dispersion of 6.6+-2.3 km/s. This implies a mass on the order of 1 x 10^7 M_sun, similar to the inferred masses of other Galactic dSphs. Adopting a total Boo luminosity of L=1.8 x 10^4 L_sun to 8.6 x 10^4 L_sun implies M/L ~ 610 to 130, making Boo, the most distorted known Milky Way dwarf galaxy, potentially also the darkest. From the spectra of Boo member stars we estimate its metallicity to be [Fe/H] ~ -2.5, which would make it the most metal poor dSph known to date.Comment: Accepted for publication in ApJ Letter

Metastatic rectal adenocarcinoma within haemorrhoids: a case report

<p>Abstract</p> <p>Introduction</p> <p>Metastatic tumour involvement of the anal canal is rare. Routine pathological evaluation of haemorrhoidectomy specimens has been suggested to be unhelpful and expensive. Selective rather than routine pathological evaluation of haemorrhoidectomy specimens has been recommended.</p> <p>Case presentation</p> <p>We report the case of a 69-year-old woman with metastatic colorectal carcinoma who presented with metastatic carcinoma within thrombosed haemorrhoids.</p> <p>Conclusion</p> <p>We suggest that in patients with colorectal cancer, careful examination of haemorrhoids on colonoscopy as well as histological examination of suspected haemorrhoidal tissue after surgical resection be performed to evaluate for metastasis.</p

Reasons for exercise and body esteem: Men.:s responses to self-objectification

In this study, we applied the construct of self-objectification to men, specifically to examine the role of reasons for exercise in men&apos;s responses to objectification. A questionnaire that assessed self-objectification, reasons for exercise, body esteem, and self-esteem was voluntarily completed by 153 Australian participants between the ages of 18 and 35 years (82 men and a comparison group of 71 women). Self-objectification and appearance-related reasons for exercise were significantly negatively related to body esteem for both men and women. Self-objectification was also positively related to appearance-related reasons for exercise. The latter was found to mediate the relationship between self-objectification and body esteem for both men and women. Men were just as likely as women to exercise for appearance-related reasons. Together, the results suggest that objectification may be sensibly applied to men and that exercising for appearance-related reasons appears to exacerbate the negative impact that self-objectification has on both men&apos;s and women&apos;s esteem

Runaway GC evolution in gerbil genomes

Recombination increases the local GC-content in genomic regions through GC-biased gene conversion (gBGC). The recent discovery of a large genomic region with extreme GC-content in the fat sand rat Psammomys obesus provides a model to study the effects of gBGC on chromosome evolution. Here, we compare the GC-content and GC-to-AT substitution patterns across protein-coding genes of four gerbil species and two murine rodents (mouse and rat). We find that the known high-GC region is present in all the gerbils, and is characterised by high substitution rates for all mutational categories (AT-to-GC, GC-to-AT and GC-conservative) both at synonymous and nonsynonymous sites. A higher AT-to-GC than GC-to-AT rate is consistent with the high GC-content. Additionally, we find more than 300 genes outside the known region with outlying values of AT-to-GC synonymous substitution rates in gerbils. Of these, over 30% are organised into at least 17 large clusters observable at the megabase-scale. The unusual GC-skewed substitution pattern suggests the evolution of genomic regions with very high recombination rates in the gerbil lineage, which can lead to a runaway increase in GC-content. Our results imply that rapid evolution of GC-content is possible in mammals, with gerbil species providing a powerful model to study the mechanisms of gBGC